1 Response_reg#1
6-119 aa · 114 aa · 7.5% of protein
Raw token
Response_reg:6:0.000000389:119:130:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS01900
Response regulator, PleD_VieA family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypePleD_VieALength1516 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS01900Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEALPAS_3
Protein length1516 aaLength used to scale native and Biotite-like views.
Annotated domains77 with usable coordinates.
Domain coverage881 / 1516 aa (58.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 GGDEF,1 EAL,3 PAS_3Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1516 aa
Domain-by-domain annotation7 items
2 GGDEF#2
133-254 aa · 122 aa · 8.0% of protein
Raw token
GGDEF:133:2.75e-16:254:134:1603 EAL#3
300-537 aa · 238 aa · 15.7% of protein
Raw token
EAL:300:6.2e-73:537:238:2354 PAS_3#4
602-691 aa · 90 aa · 5.9% of protein
Raw token
PAS_3:602:0.0000000061:691:90:895 PAS_3#5
875-955 aa · 81 aa · 5.3% of protein
Raw token
PAS_3:875:1.83e-17:955:81:896 PAS_3#6
1000-1083 aa · 84 aa · 5.5% of protein
Raw token
PAS_3:1000:0.00000117:1083:84:897 GGDEF#7
1239-1390 aa · 152 aa · 10.0% of protein
Raw token
GGDEF:1239:8.05e-37:1390:159:160- Raw architecture: Response_reg:6:0.000000389:119:130:111#GGDEF:133:2.75e-16:254:134:160#EAL:300:6.2e-73:537:238:235#PAS_3:602:0.0000000061:691:90:89#PAS_3:875:1.83e-17:955:81:89#PAS_3:1000:0.00000117:1083:84:89#GGDEF:1239:8.05e-37:1390:159:160
- Domain description: 1 Response_reg,2 GGDEF,1 EAL,3 PAS_3
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span374842-379392Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_001915RefSeq proteinWP_167495137.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00015Context members
CPZ25_RS01900
Partner locus tags
CPZ25_RS01900
Partner old locus tags
CPZ25_001915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167495137.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS01900Primary locus identifier stored in the genes table.
Old locus tagCPZ25_001915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval374 842-379 392 nt4 551 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span374 842-379 392 ntGCF_002441855::NZ_CP029487.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span374 842-379 392 nt4 551 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
374 842 nt379 392 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS01900GCF_002441855#CPZ25_RS01900
RRPleD_VieACurrent focus
374 842-379 392 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS01900The current gene is the representative for this cluster.
PFAM architectureGGDEF + EAL + PAS_3 + PAS_3 + PAS_3 + PAS_3 + GGDEF7 domains in the representative PFAM annotation.
PFAM architecture for RROC_0002087
Simplified PFAM architecture for RROC_0002087
PFAM domain coverage: 789 / 1516 aa (52.0%)
1 aa1516 aa
GGDEFEALPAS_3PAS_3PAS_3PAS_3GGDEF
- Simplified architecture: GGDEF + EAL + PAS_3 + PAS_3 + PAS_3 + PAS_3 + GGDEF
- Raw architecture: GGDEF[133-244] | EAL[301-537] | PAS_3[603-679] | PAS_3[875-957] | PAS_3[1000-1081] | PAS_3[1171-1215] | GGDEF[1237-1389]
- Domain count: 7
- Matched identifier: RROC_0002087
- Positioned domains: GGDEF 133-244 ; GGDEF 133-244 ; EAL 301-537 ; EAL 301-537 ; PAS_3 603-679 ; PAS_3 603-679 ; PAS_3 875-957 ; PAS_3 875-957 ; PAS_3 1000-1081 ; PAS_3 1000-1081 ; PAS_3 1171-1215 ; PAS_3 1171-1215 ; GGDEF 1237-1389 ; GGDEF 1237-1389
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS01900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key