1 HisKA#1
193-258 aa · 66 aa · 15.8% of protein
Raw token
HisKA:193:0.000000000000141:258:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS01660
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS01660Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 418 aa (42.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
304-416 aa · 113 aa · 27.0% of protein
Raw token
HATPase_c:304:5.64e-33:416:113:109- Raw architecture: HisKA:193:0.000000000000141:258:66:64#HATPase_c:304:5.64e-33:416:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span333080-335004Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_001675RefSeq proteinWP_074616060.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00014Context members
CPZ25_RS01655CPZ25_RS01660
Partner locus tags
CPZ25_RS01655CPZ25_RS01660
Partner old locus tags
CPZ25_001670CPZ25_001675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_074616060.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C459Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C459_EUBMLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS01660Primary locus identifier stored in the genes table.
Old locus tagCPZ25_001675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval333 748-335 004 nt1 257 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span333 080-335 004 ntGCF_002441855::NZ_CP029487.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span333 080-335 004 nt1 925 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
333 080 nt335 004 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS01655GCF_002441855#CPZ25_RS01655
RROmpR
333 080-333 748 nt · Forward (+)
CPZ25_RS01660GCF_002441855#CPZ25_RS01660
HKClassicCurrent focus
333 748-335 004 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS01660The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2286284
Simplified PFAM architecture for HKOC_2286284
PFAM domain coverage: 178 / 418 aa (42.6%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[193-258] | HATPase_c[304-415]
- Domain count: 2
- Matched identifier: HKOC_2286284
- Positioned domains: HisKA 193-258 ; HATPase_c 304-415
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS01660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key