Gene detail

CPZ25_RS01475

Histidine kinase, Hybrid

Eubacterium maltosivorans · GCF_002441855

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength1049 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_002441855#CPZ25_RS01475Stable P2CS identifier used across views.

GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium

Selected clusterHKOC_0260270Run 6 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_096919450.1 · A0A4V1GLJ8 · MIST4 CPZ25_RS01475RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

PBPbSBP_bac_3HisKAHATPase_cResponse_reg

Protein length1049 aaLength used to scale native and Biotite-like views.

Annotated domains66 with usable coordinates.

Domain coverage821 / 1049 aa (78.3%)Merged over positioned domains only.

Domain description1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa1049 aa

Domain-by-domain annotation6 items

1 PBPb#1

35-252 aa · 218 aa · 20.8% of protein

Raw tokenPBPb:35:2.08e-23:252:230:219

2 SBP_bac_3#2

276-475 aa · 200 aa · 19.1% of protein

Raw tokenSBP_bac_3:276:0.0000000000000922:475:217:224

3 HisKA#3

547-613 aa · 67 aa · 6.4% of protein

Raw tokenHisKA:547:7.49e-20:613:67:64

4 HATPase_c#4

660-777 aa · 118 aa · 11.2% of protein

Raw tokenHATPase_c:660:2.65e-34:777:118:109

5 Response_reg#5

805-904 aa · 100 aa · 9.5% of protein

Raw tokenResponse_reg:805:0.000000596:904:100:111

6 Response_reg#6

926-1043 aa · 118 aa · 11.2% of protein

Raw tokenResponse_reg:926:1.08e-28:1043:118:111

Raw architecture: PBPb:35:2.08e-23:252:230:219#SBP_bac_3:276:0.0000000000000922:475:217:224#HisKA:547:7.49e-20:613:67:64#HATPase_c:660:2.65e-34:777:118:109#Response_reg:805:0.000000596:904:100:111#Response_reg:926:1.08e-28:1043:118:111
Domain description: 1 PBPb,1 SBP_bac_3,1 HisKA,1 HATPase_c,2 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_002441855::NZ_CP029487.1::G00012

Group size11 locus tag listed below.

HK / RR1 / 0Counts resolved for the local TCS neighborhood.

Context span297001-300150Genomic interval covered by the local TCS group.

Identifiers

Old locus tagCPZ25_001490RefSeq proteinWP_096919450.1

Context group IDGCF_002441855::NZ_CP029487.1::G00012

Context members

CPZ25_RS01475

Partner locus tags

CPZ25_RS01475

Partner old locus tags

CPZ25_001490

Partner protein IDs

WP_096919450.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_096919450.1Primary protein accession used for annex mappings.

UniProt accessionA0A4V1GLJ8Primary UniProt accession resolved in the annex database.

UniProt IDA0A4V1GLJ8_EUBMLDisplay identifier provided by UniProt.

GO / PubMed1 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagCPZ25_RS01475Primary locus identifier stored in the genes table.

Old locus tagCPZ25_001490Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.

Genomic interval297 001-300 150 nt3 150 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span297 001-300 150 ntGCF_002441855::NZ_CP029487.1::G00012

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_002441855::NZ_CP029487.1::G00012

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.

Neighborhood span297 001-300 150 nt3 150 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

297 001 nt300 150 nt

+-CPZ25_RS01475

Neighborhood gene cards

1 gene in the current local neighborhood.

CPZ25_RS01475GCF_002441855#CPZ25_RS01475

HKHybridCurrent focus

297 001-300 150 nt · Forward (+)

Old locus CPZ25_001490RefSeq WP_096919450.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0260270HK

Run 61 sequencesid 100%cov 80%

PFAM SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg

Current gene is the representative sequence.

Selected clusterHKOC_0260270Run 6 · HK · 1 sequences

Representative sequenceGCF_002441855#CPZ25_RS01475The current gene is the representative for this cluster.

PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0260270

Simplified PFAM architecture for HKOC_0260270

PFAM domain coverage: 669 / 1049 aa (63.8%)

1 aa1049 aa

SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg

Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
Raw architecture: SBP_bac_3[50-253] | SBP_bac_3[276-439] | HisKA[547-613] | HATPase_c[660-775] | Response_reg[926-1043]
Domain count: 5
Matched identifier: HKOC_0260270
Positioned domains: SBP_bac_3 50-253 ; SBP_bac_3 276-439 ; HisKA 547-613 ; HATPase_c 660-775 ; Response_reg 926-1043

Cluster members and taxonomy

Representative gene: GCF_002441855#CPZ25_RS01475

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855

AssemblyASM244185v2 · Complete Genomereference genome · haploid

Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans

Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

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Preview from the same derived genome key