1 sCache_like#1
72-146 aa · 75 aa · 12.8% of protein
Raw token
sCache_like:72:0.000000325:146:75:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS01450
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS01450Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
sCache_likeHAMPPASHisKAHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage396 / 586 aa (67.6%)Merged over positioned domains only.
Domain description1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation5 items
2 HAMP#2
163-230 aa · 68 aa · 11.6% of protein
Raw token
HAMP:163:0.00000000000661:230:68:693 PAS#3
243-319 aa · 77 aa · 13.1% of protein
Raw token
PAS:243:0.0000211:319:80:1134 HisKA#4
358-424 aa · 67 aa · 11.4% of protein
Raw token
HisKA:358:1.16e-16:424:67:645 HATPase_c#5
472-580 aa · 109 aa · 18.6% of protein
Raw token
HATPase_c:472:2.09e-32:580:109:109- Raw architecture: sCache_like:72:0.000000325:146:75:114#HAMP:163:0.00000000000661:230:68:69#PAS:243:0.0000211:319:80:113#HisKA:358:1.16e-16:424:67:64#HATPase_c:472:2.09e-32:580:109:109
- Domain description: 1 sCache_like,1 HAMP,1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289478-291936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_001465RefSeq proteinWP_096919446.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00011Context members
CPZ25_RS01445CPZ25_RS01450
Partner locus tags
CPZ25_RS01445CPZ25_RS01450
Partner old locus tags
CPZ25_001460CPZ25_001465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919446.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5V1Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5V1_EUBMLDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS01450Primary locus identifier stored in the genes table.
Old locus tagCPZ25_001465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval290 176-291 936 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 478-291 936 ntGCF_002441855::NZ_CP029487.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span289 478-291 936 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 478 nt291 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS01445GCF_002441855#CPZ25_RS01445
RROmpR
289 478-290 179 nt · Forward (+)
CPZ25_RS01450GCF_002441855#CPZ25_RS01450
HKClassicCurrent focus
290 176-291 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS01450The current gene is the representative for this cluster.
PFAM architectureHAMP + PAS + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132123
Simplified PFAM architecture for HKOC_1132123
PFAM domain coverage: 316 / 586 aa (53.9%)
1 aa586 aa
HAMPPASHisKAHATPase_c
- Simplified architecture: HAMP + PAS + HisKA + HATPase_c
- Raw architecture: HAMP[184-231] | PAS[244-335] | HisKA[358-423] | HATPase_c[472-581]
- Domain count: 4
- Matched identifier: HKOC_1132123
- Positioned domains: HAMP 184-231 ; PAS 244-335 ; HisKA 358-423 ; HATPase_c 472-581
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS01450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key