1 KdpD#1
32-239 aa · 208 aa · 22.9% of protein
Raw token
KdpD:32:4.76e-133:239:208:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS01110
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength907 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS01110Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length907 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 907 aa (43.0%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
677-745 aa · 69 aa · 7.6% of protein
Raw token
HisKA:677:8.5e-16:745:69:643 HATPase_c#3
789-901 aa · 113 aa · 12.5% of protein
Raw token
HATPase_c:789:2.61e-26:901:113:109- Raw architecture: KdpD:32:4.76e-133:239:208:210#HisKA:677:8.5e-16:745:69:64#HATPase_c:789:2.61e-26:901:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span212965-216373Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_001125RefSeq proteinWP_096919406.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00009Context members
CPZ25_RS01110CPZ25_RS01115
Partner locus tags
CPZ25_RS01110CPZ25_RS01115
Partner old locus tags
CPZ25_001125CPZ25_001130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919406.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5X3Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5X3_EUBMLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS01110Primary locus identifier stored in the genes table.
Old locus tagCPZ25_001125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval212 965-215 688 nt2 724 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span212 965-216 373 ntGCF_002441855::NZ_CP029487.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span212 965-216 373 nt3 409 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
212 965 nt216 373 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS01110GCF_002441855#CPZ25_RS01110
HKClassicCurrent focus
212 965-215 688 nt · Forward (+)
CPZ25_RS01115GCF_002441855#CPZ25_RS01115
RROmpR
215 678-216 373 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS01110The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0395532
Simplified PFAM architecture for HKOC_0395532
PFAM domain coverage: 493 / 907 aa (54.4%)
1 aa907 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[32-239] | DUF4118[409-513] | HisKA[677-745] | HATPase_c[790-900]
- Domain count: 4
- Matched identifier: HKOC_0395532
- Positioned domains: KdpD 32-239 ; DUF4118 409-513 ; HisKA 677-745 ; HATPase_c 790-900
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS01110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key