1 HisKA#1
84-150 aa · 67 aa · 22.2% of protein
Raw token
HisKA:84:7.15e-16:150:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00475
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS00475Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 302 aa (56.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
196-297 aa · 102 aa · 33.8% of protein
Raw token
HATPase_c:196:1.71e-17:297:106:109- Raw architecture: HisKA:84:7.15e-16:150:67:64#HATPase_c:196:1.71e-17:297:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span77955-78863Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000480RefSeq proteinWP_096919326.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00002Context members
CPZ25_RS00475
Partner locus tags
CPZ25_RS00475
Partner old locus tags
CPZ25_000480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919326.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C3K3Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C3K3_EUBMLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00475Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval77 955-78 863 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span77 955-78 863 ntGCF_002441855::NZ_CP029487.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span77 955-78 863 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 955 nt78 863 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS00475GCF_002441855#CPZ25_RS00475
HKClassicCurrent focus
77 955-78 863 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00475The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884861
Simplified PFAM architecture for HKOC_2884861
PFAM domain coverage: 166 / 302 aa (55.0%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-150] | HATPase_c[197-296]
- Domain count: 2
- Matched identifier: HKOC_2884861
- Positioned domains: HisKA 85-150 ; HATPase_c 197-296
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key