1 dCache_1#1
162-275 aa · 114 aa · 16.3% of protein
Raw token
dCache_1:162:0.0000448:275:115:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00875
Histidine kinase, Hybrid
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeHybridLength701 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS00875Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length701 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage416 / 701 aa (59.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HisKA#2
326-392 aa · 67 aa · 9.6% of protein
Raw token
HisKA:326:3.37e-18:392:67:643 HATPase_c#3
438-555 aa · 118 aa · 16.8% of protein
Raw token
HATPase_c:438:1.46e-29:555:119:1094 Response_reg#4
581-697 aa · 117 aa · 16.7% of protein
Raw token
Response_reg:581:4.66e-26:697:117:111- Raw architecture: dCache_1:162:0.0000448:275:115:195#HisKA:326:3.37e-18:392:67:64#HATPase_c:438:1.46e-29:555:119:109#Response_reg:581:4.66e-26:697:117:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span154447-156552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000890RefSeq proteinWP_096919380.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00008Context members
CPZ25_RS00875
Partner locus tags
CPZ25_RS00875
Partner old locus tags
CPZ25_000890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919380.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5K2Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5K2_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00875Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval154 447-156 552 nt2 106 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 447-156 552 ntGCF_002441855::NZ_CP029487.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span154 447-156 552 nt2 106 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 447 nt156 552 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS00875GCF_002441855#CPZ25_RS00875
HKHybridCurrent focus
154 447-156 552 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00875The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0767431
Simplified PFAM architecture for HKOC_0767431
PFAM domain coverage: 299 / 701 aa (42.7%)
1 aa701 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[327-392] | HATPase_c[438-553] | Response_reg[581-697]
- Domain count: 3
- Matched identifier: HKOC_0767431
- Positioned domains: HisKA 327-392 ; HATPase_c 438-553 ; Response_reg 581-697
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key