1 HisKA#1
226-296 aa · 71 aa · 15.7% of protein
Raw token
HisKA:226:0.0000000000135:296:71:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00675
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS00675Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 451 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
342-446 aa · 105 aa · 23.3% of protein
Raw token
HATPase_c:342:1.82e-33:446:107:109- Raw architecture: HisKA:226:0.0000000000135:296:71:64#HATPase_c:342:1.82e-33:446:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116813-118859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000690RefSeq proteinWP_096919350.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00004Context members
CPZ25_RS00675CPZ25_RS00680
Partner locus tags
CPZ25_RS00675CPZ25_RS00680
Partner old locus tags
CPZ25_000690CPZ25_000695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919350.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5G4Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5G4_EUBMLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00675Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval116 813-118 168 nt1 356 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 813-118 859 ntGCF_002441855::NZ_CP029487.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span116 813-118 859 nt2 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 813 nt118 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS00675GCF_002441855#CPZ25_RS00675
HKClassicCurrent focus
116 813-118 168 nt · Forward (+)
CPZ25_RS00680GCF_002441855#CPZ25_RS00680
RROmpR
118 170-118 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1951846
Simplified PFAM architecture for HKOC_1951846
PFAM domain coverage: 175 / 451 aa (38.8%)
1 aa451 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[227-296] | HATPase_c[342-446]
- Domain count: 2
- Matched identifier: HKOC_1951846
- Positioned domains: HisKA 227-296 ; HATPase_c 342-446
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key