1 Response_reg#1
7-119 aa · 113 aa · 49.1% of protein
Raw token
Response_reg:7:9.63e-28:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9L49_RS26650
Response regulator, unclassified
Bacillus cereus · GCF_001678165
ClassRRTypeunclassifiedLength230 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001678165#A9L49_RS26650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_11
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 230 aa (67.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_11Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 HTH_11#2
171-212 aa · 42 aa · 18.3% of protein
Raw token
HTH_11:171:0.0000491:212:43:52- Raw architecture: Response_reg:7:9.63e-28:119:113:111#HTH_11:171:0.0000491:212:43:52
- Domain description: 1 Response_reg,1 HTH_11
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001678165::NZ_LYVD01000023.1::G00066
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30675-31367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9L49_03065RefSeq proteinWP_065229730.1
Context group ID
GCF_001678165::NZ_LYVD01000023.1::G00066Context members
A9L49_RS26650
Partner locus tags
A9L49_RS26650
Partner old locus tags
A9L49_03065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065229730.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9L49_RS26650Primary locus identifier stored in the genes table.
Old locus tagA9L49_03065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYVD01000023.1Sequence record reported by the local genomic context database.
Genomic interval30 675-31 367 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 675-31 367 ntGCF_001678165::NZ_LYVD01000023.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678165::NZ_LYVD01000023.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYVD01000023.1All displayed genes belong to this local TCS context.
Neighborhood span30 675-31 367 nt693 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 675 nt31 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A9L49_RS26650GCF_001678165#A9L49_RS26650
RRunclassifiedCurrent focus
30 675-31 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001678165#A9L49_RS26650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_642 domains in the representative PFAM annotation.
PFAM architecture for RROC_1206650
Simplified PFAM architecture for RROC_1206650
PFAM domain coverage: 160 / 230 aa (69.6%)
1 aa230 aa
Response_regHTH_64
- Simplified architecture: Response_reg + HTH_64
- Raw architecture: Response_reg[7-118] | HTH_64[179-226]
- Domain count: 2
- Matched identifier: RROC_1206650
- Positioned domains: Response_reg 7-118 ; Response_reg 7-118 ; HTH_64 179-226 ; HTH_64 179-226
Cluster members and taxonomy
Representative gene: GCF_001678165#A9L49_RS26650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001678165
AssemblyASM167816v1 · Scaffoldhaploid
Genome composition6 404 077 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 116 · HK 63 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key