1 HAMP#1
57-126 aa · 70 aa · 19.4% of protein
Raw token
HAMP:57:0.0000000158:126:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9L49_RS01135
Histidine kinase, Classic
Bacillus cereus · GCF_001678165
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001678165#A9L49_RS01135Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 361 aa (69.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.8% of protein
Raw token
HisKA:137:0.00000000000269:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 31.0% of protein
Raw token
HATPase_c:249:1.43e-24:360:113:109- Raw architecture: HAMP:57:0.0000000158:126:70:69#HisKA:137:0.00000000000269:204:68:64#HATPase_c:249:1.43e-24:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001678165::NZ_LYVD01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span100349-102125Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9L49_04475RefSeq proteinWP_001074331.1
Context group ID
GCF_001678165::NZ_LYVD01000002.1::G00005Context members
A9L49_RS01130A9L49_RS01135
Partner locus tags
A9L49_RS01130A9L49_RS01135
Partner old locus tags
A9L49_04470A9L49_04475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001074331.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6TX25Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6TX25_BACTUDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9L49_RS01135Primary locus identifier stored in the genes table.
Old locus tagA9L49_04475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYVD01000002.1Sequence record reported by the local genomic context database.
Genomic interval101 040-102 125 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span100 349-102 125 ntGCF_001678165::NZ_LYVD01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678165::NZ_LYVD01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYVD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span100 349-102 125 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
100 349 nt102 125 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9L49_RS01130GCF_001678165#A9L49_RS01130
RROmpR
100 349-101 047 nt · Forward (+)
A9L49_RS01135GCF_001678165#A9L49_RS01135
HKClassicCurrent focus
101 040-102 125 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS00690Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740709
Simplified PFAM architecture for HKOC_2740709
PFAM domain coverage: 221 / 361 aa (61.2%)
1 aa361 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2740709
- Positioned domains: HAMP 82-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS00690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001678165
AssemblyASM167816v1 · Scaffoldhaploid
Genome composition6 404 077 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 116 · HK 63 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key