1 HAMP#1
168-234 aa · 67 aa · 14.4% of protein
Raw token
HAMP:168:6.62e-16:234:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A9L49_RS03190
Histidine kinase, Classic
Bacillus cereus · GCF_001678165
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001678165#A9L49_RS03190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 466 aa (51.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HisKA#2
238-304 aa · 67 aa · 14.4% of protein
Raw token
HisKA:238:7.69e-19:304:67:643 HATPase_c#3
350-457 aa · 108 aa · 23.2% of protein
Raw token
HATPase_c:350:1.15e-32:457:108:109- Raw architecture: HAMP:168:6.62e-16:234:67:69#HisKA:238:7.69e-19:304:67:64#HATPase_c:350:1.15e-32:457:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001678165::NZ_LYVD01000004.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65455-67530Genomic interval covered by the local TCS group.
Identifiers
Old locus tagA9L49_06530RefSeq proteinWP_000494811.1
Context group ID
GCF_001678165::NZ_LYVD01000004.1::G00010Context members
A9L49_RS03185A9L49_RS03190
Partner locus tags
A9L49_RS03185A9L49_RS03190
Partner old locus tags
A9L49_06525A9L49_06530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000494811.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6U117Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6U117_BACTUDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA9L49_RS03190Primary locus identifier stored in the genes table.
Old locus tagA9L49_06530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LYVD01000004.1Sequence record reported by the local genomic context database.
Genomic interval66 130-67 530 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 455-67 530 ntGCF_001678165::NZ_LYVD01000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001678165::NZ_LYVD01000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LYVD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span65 455-67 530 nt2 076 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 455 nt67 530 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A9L49_RS03185GCF_001678165#A9L49_RS03185
RROmpR
65 455-66 126 nt · Forward (+)
A9L49_RS03190GCF_001678165#A9L49_RS03190
HKClassicCurrent focus
66 130-67 530 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291035#ICE_RS02755Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1761956
Simplified PFAM architecture for HKOC_1761956
PFAM domain coverage: 223 / 466 aa (47.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[186-233] | HisKA[239-303] | HATPase_c[350-459]
- Domain count: 3
- Matched identifier: HKOC_1761956
- Positioned domains: HAMP 186-233 ; HisKA 239-303 ; HATPase_c 350-459
Cluster members and taxonomy
Representative gene: GCF_000291035#ICE_RS02755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001678165
AssemblyASM167816v1 · Scaffoldhaploid
Genome composition6 404 077 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 116 · HK 63 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key