1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.93e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4082_RS25075
Response regulator OmpR family
Bacillus cereus · GCF_001619425
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619425#B4082_RS25075Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:152:1.96e-35:227:76:77- Raw architecture: Response_reg:5:1.93e-33:114:111:111#Trans_reg_C:152:1.96e-35:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619425::NZ_LJKA01000073.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85364-86993Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4082_5161RefSeq proteinWP_063224761.1
Context group ID
GCF_001619425::NZ_LJKA01000073.1::G00065Context members
B4082_RS25075B4082_RS25080
Partner locus tags
B4082_RS25075B4082_RS25080
Partner old locus tags
B4082_5161B4082_5162
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063224761.1Primary protein accession used for annex mappings.
UniProt accessionA0A2B0XFV8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2B0XFV8_BACANDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4082_RS25075Primary locus identifier stored in the genes table.
Old locus tagB4082_5161Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKA01000073.1Sequence record reported by the local genomic context database.
Genomic interval85 364-86 056 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 364-86 993 ntGCF_001619425::NZ_LJKA01000073.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619425::NZ_LJKA01000073.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKA01000073.1All displayed genes belong to this local TCS context.
Neighborhood span85 364-86 993 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 364 nt86 993 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4082_RS25075GCF_001619425#B4082_RS25075
RROmpRCurrent focus
85 364-86 056 nt · Forward (+)
B4082_RS25080GCF_001619425#B4082_RS25080
HKClassic
86 058-86 993 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS25075The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1206356
Simplified PFAM architecture for RROC_1206356
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1206356
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS25075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619425
AssemblyASM161942v1 · Scaffoldhaploid
Genome composition5 717 535 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key