1 PAS_9#1
42-139 aa · 98 aa · 19.3% of protein
Raw token
PAS_9:42:0.0000000000189:139:99:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4082_RS02725
Histidine kinase, Classic
Bacillus cereus · GCF_001619425
ClassHKTypeClassicLength508 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001619425#B4082_RS02725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_9PAS_4HisKAHATPase_c
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage380 / 508 aa (74.8%)Merged over positioned domains only.
Domain description1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation4 items
2 PAS_4#2
162-277 aa · 116 aa · 22.8% of protein
Raw token
PAS_4:162:0.000000000000002:277:116:1103 HisKA#3
292-352 aa · 61 aa · 12.0% of protein
Raw token
HisKA:292:0.0000000000000501:352:61:644 HATPase_c#4
397-501 aa · 105 aa · 20.7% of protein
Raw token
HATPase_c:397:9.26e-28:501:108:109- Raw architecture: PAS_9:42:0.0000000000189:139:99:102#PAS_4:162:0.000000000000002:277:116:110#HisKA:292:0.0000000000000501:352:61:64#HATPase_c:397:9.26e-28:501:108:109
- Domain description: 1 PAS_9,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001619425::NZ_LJKA01000004.1::G00055
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span143134-144660Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4082_0549RefSeq proteinWP_063221299.1
Context group ID
GCF_001619425::NZ_LJKA01000004.1::G00055Context members
B4082_RS02725
Partner locus tags
B4082_RS02725
Partner old locus tags
B4082_0549
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063221299.1Primary protein accession used for annex mappings.
UniProt accessionA0A164I8G4Primary UniProt accession resolved in the annex database.
UniProt IDA0A164I8G4_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4082_RS02725Primary locus identifier stored in the genes table.
Old locus tagB4082_0549Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKA01000004.1Sequence record reported by the local genomic context database.
Genomic interval143 134-144 660 nt1 527 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span143 134-144 660 ntGCF_001619425::NZ_LJKA01000004.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619425::NZ_LJKA01000004.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKA01000004.1All displayed genes belong to this local TCS context.
Neighborhood span143 134-144 660 nt1 527 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 134 nt144 660 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
B4082_RS02725GCF_001619425#B4082_RS02725
HKClassicCurrent focus
143 134-144 660 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS02725The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1437121
Simplified PFAM architecture for HKOC_1437121
PFAM domain coverage: 378 / 508 aa (74.4%)
1 aa508 aa
PAS_9PAS_4HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_9[42-138] | PAS_4[162-276] | HisKA[292-351] | HATPase_c[397-502]
- Domain count: 4
- Matched identifier: HKOC_1437121
- Positioned domains: PAS_9 42-138 ; PAS_4 162-276 ; HisKA 292-351 ; HATPase_c 397-502
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS02725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619425
AssemblyASM161942v1 · Scaffoldhaploid
Genome composition5 717 535 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key