1 HAMP#1
165-232 aa · 68 aa · 14.8% of protein
Raw token
HAMP:165:6.16e-17:232:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4082_RS03985
Histidine kinase, Classic
Bacillus cereus · GCF_001619425
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619425#B4082_RS03985Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 458 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000396:303:61:643 HATPase_c#3
349-457 aa · 109 aa · 23.8% of protein
Raw token
HATPase_c:349:3.56e-19:457:115:109- Raw architecture: HAMP:165:6.16e-17:232:68:69#HisKA:244:0.00000000000396:303:61:64#HATPase_c:349:3.56e-19:457:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619425::NZ_LJKA01000011.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span108155-110171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4082_0813RefSeq proteinWP_063221495.1
Context group ID
GCF_001619425::NZ_LJKA01000011.1::G00042Context members
B4082_RS03985B4082_RS03990
Partner locus tags
B4082_RS03985B4082_RS03990
Partner old locus tags
B4082_0813B4082_0814
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_063221495.1Primary protein accession used for annex mappings.
UniProt accessionA0A164HMQ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A164HMQ3_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4082_RS03985Primary locus identifier stored in the genes table.
Old locus tagB4082_0813Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKA01000011.1Sequence record reported by the local genomic context database.
Genomic interval108 155-109 531 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span108 155-110 171 ntGCF_001619425::NZ_LJKA01000011.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619425::NZ_LJKA01000011.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKA01000011.1All displayed genes belong to this local TCS context.
Neighborhood span108 155-110 171 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 155 nt110 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4082_RS03985GCF_001619425#B4082_RS03985
HKClassicCurrent focus
108 155-109 531 nt · Reverse (-)
B4082_RS03990GCF_001619425#B4082_RS03990
RROmpR
109 524-110 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS03985The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1860447
Simplified PFAM architecture for HKOC_1860447
PFAM domain coverage: 206 / 458 aa (45.0%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-232] | HisKA[245-303] | HATPase_c[350-444]
- Domain count: 3
- Matched identifier: HKOC_1860447
- Positioned domains: HAMP 181-232 ; HisKA 245-303 ; HATPase_c 350-444
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS03985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619425
AssemblyASM161942v1 · Scaffoldhaploid
Genome composition5 717 535 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key