1 Response_reg#1
4-116 aa · 113 aa · 53.1% of protein
Raw token
Response_reg:4:3.6e-34:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B4082_RS12495
Response regulator NarL family
Bacillus cereus · GCF_001619425
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001619425#B4082_RS12495Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 213 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
150-204 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:150:1.31e-24:204:55:58- Raw architecture: Response_reg:4:3.6e-34:116:113:111#HTH_LUXR:150:1.31e-24:204:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001619425::NZ_LJKA01000040.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span106109-108584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB4082_2564RefSeq proteinWP_048527415.1
Context group ID
GCF_001619425::NZ_LJKA01000040.1::G00017Context members
B4082_RS12495B4082_RS12500
Partner locus tags
B4082_RS12495B4082_RS12500
Partner old locus tags
B4082_2564B4082_2565
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_048527415.1Primary protein accession used for annex mappings.
UniProt accessionA0A2C4HHY3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2C4HHY3_9BACIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB4082_RS12495Primary locus identifier stored in the genes table.
Old locus tagB4082_2564Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LJKA01000040.1Sequence record reported by the local genomic context database.
Genomic interval106 109-106 750 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span106 109-108 584 ntGCF_001619425::NZ_LJKA01000040.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001619425::NZ_LJKA01000040.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LJKA01000040.1All displayed genes belong to this local TCS context.
Neighborhood span106 109-108 584 nt2 476 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 109 nt108 584 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B4082_RS12495GCF_001619425#B4082_RS12495
RRNarLCurrent focus
106 109-106 750 nt · Reverse (-)
B4082_RS12500GCF_001619425#B4082_RS12500
HKClassic
106 752-108 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001619425#B4082_RS12495The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1965484
Simplified PFAM architecture for RROC_1965484
PFAM domain coverage: 169 / 213 aa (79.3%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[149-204]
- Domain count: 2
- Matched identifier: RROC_1965484
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 149-204 ; GerE 149-204
Cluster members and taxonomy
Representative gene: GCF_001619425#B4082_RS12495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_001619425
AssemblyASM161942v1 · Scaffoldhaploid
Genome composition5 717 535 bp · 35,0% GCBacillus cereus
Signal transduction countsGenes 120 · HK 66 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key