1 HisKA#1
131-194 aa · 64 aa · 18.0% of protein
Raw token
HisKA:131:0.00000000000004:194:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN56_RS12365
Histidine kinase, Classic
Enterococcus faecium · GCF_001543565
ClassHKTypeClassicLength356 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001543565#AWN56_RS12365Stable P2CS identifier used across views.
GenomeGCF_001543565Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 356 aa (49.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-354 aa · 112 aa · 31.5% of protein
Raw token
HATPase_c:243:8.89e-27:354:113:109- Raw architecture: HisKA:131:0.00000000000004:194:64:64#HATPase_c:243:8.89e-27:354:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001543565::NZ_LRAV01000177.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span27365-28435Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN56_12395RefSeq proteinWP_060776039.1
Context group ID
GCF_001543565::NZ_LRAV01000177.1::G00019Context members
AWN56_RS12365
Partner locus tags
AWN56_RS12365
Partner old locus tags
AWN56_12395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060776039.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN56_RS12365Primary locus identifier stored in the genes table.
Old locus tagAWN56_12395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAV01000177.1Sequence record reported by the local genomic context database.
Genomic interval27 365-28 435 nt1 071 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 365-28 435 ntGCF_001543565::NZ_LRAV01000177.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543565::NZ_LRAV01000177.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAV01000177.1All displayed genes belong to this local TCS context.
Neighborhood span27 365-28 435 nt1 071 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 365 nt28 435 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AWN56_RS12365GCF_001543565#AWN56_RS12365
HKClassicCurrent focus
27 365-28 435 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001543565#AWN56_RS12365The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2770837
Simplified PFAM architecture for HKOC_2770837
PFAM domain coverage: 174 / 356 aa (48.9%)
1 aa356 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-194] | HATPase_c[243-353]
- Domain count: 2
- Matched identifier: HKOC_2770837
- Positioned domains: HisKA 132-194 ; HATPase_c 243-353
Cluster members and taxonomy
Representative gene: GCF_001543565#AWN56_RS12365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543565
AssemblyASM154356v1 · Scaffoldhaploid
Genome composition3 016 176 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key