1 HisKA#1
147-210 aa · 64 aa · 17.3% of protein
Raw token
HisKA:147:0.00000000000208:210:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN56_RS01675
Histidine kinase, Classic
Enterococcus faecium · GCF_001543565
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001543565#AWN56_RS01675Stable P2CS identifier used across views.
GenomeGCF_001543565Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 371 aa (47.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-370 aa · 111 aa · 29.9% of protein
Raw token
HATPase_c:260:2.08e-26:370:113:109- Raw architecture: HisKA:147:0.00000000000208:210:64:64#HATPase_c:260:2.08e-26:370:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001543565::NZ_LRAV01000018.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18711-20520Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN56_01680RefSeq proteinWP_002299677.1
Context group ID
GCF_001543565::NZ_LRAV01000018.1::G00003Context members
AWN56_RS01670AWN56_RS01675
Partner locus tags
AWN56_RS01670AWN56_RS01675
Partner old locus tags
AWN56_01675AWN56_01680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002299677.1Primary protein accession used for annex mappings.
UniProt accessionA0A829FKU5Primary UniProt accession resolved in the annex database.
UniProt IDA0A829FKU5_ENTFCDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN56_RS01675Primary locus identifier stored in the genes table.
Old locus tagAWN56_01680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAV01000018.1Sequence record reported by the local genomic context database.
Genomic interval19 405-20 520 nt1 116 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 711-20 520 ntGCF_001543565::NZ_LRAV01000018.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543565::NZ_LRAV01000018.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAV01000018.1All displayed genes belong to this local TCS context.
Neighborhood span18 711-20 520 nt1 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 711 nt20 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN56_RS01670GCF_001543565#AWN56_RS01670
RROmpR
18 711-19 412 nt · Forward (+)
AWN56_RS01675GCF_001543565#AWN56_RS01675
HKClassicCurrent focus
19 405-20 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000172835#EFME1636_RS15870Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2676154
Simplified PFAM architecture for HKOC_2676154
PFAM domain coverage: 175 / 371 aa (47.2%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[148-211] | HATPase_c[260-370]
- Domain count: 2
- Matched identifier: HKOC_2676154
- Positioned domains: HisKA 148-211 ; HATPase_c 260-370
Cluster members and taxonomy
Representative gene: GCF_000172835#EFME1636_RS15870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543565
AssemblyASM154356v1 · Scaffoldhaploid
Genome composition3 016 176 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key