1 Response_reg#1
4-110 aa · 107 aa · 48.2% of protein
Raw token
Response_reg:4:3e-28:110:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AWN56_RS00610
Response regulator OmpR family
Enterococcus faecium · GCF_001543565
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001543565#AWN56_RS00610Stable P2CS identifier used across views.
GenomeGCF_001543565Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 222 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 33.8% of protein
Raw token
Trans_reg_C:144:3.45e-20:218:77:77- Raw architecture: Response_reg:4:3e-28:110:110:111#Trans_reg_C:144:3.45e-20:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001543565::NZ_LRAV01000008.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7480-9500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAWN56_00615RefSeq proteinWP_002317716.1
Context group ID
GCF_001543565::NZ_LRAV01000008.1::G00001Context members
AWN56_RS00610AWN56_RS00615
Partner locus tags
AWN56_RS00610AWN56_RS00615
Partner old locus tags
AWN56_00615AWN56_00620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002317716.1Primary protein accession used for annex mappings.
UniProt accessionA0A414M4W1Primary UniProt accession resolved in the annex database.
UniProt IDA0A414M4W1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAWN56_RS00610Primary locus identifier stored in the genes table.
Old locus tagAWN56_00615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LRAV01000008.1Sequence record reported by the local genomic context database.
Genomic interval7 480-8 148 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 480-9 500 ntGCF_001543565::NZ_LRAV01000008.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001543565::NZ_LRAV01000008.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LRAV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span7 480-9 500 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 480 nt9 500 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AWN56_RS00610GCF_001543565#AWN56_RS00610
RROmpRCurrent focus
7 480-8 148 nt · Forward (+)
AWN56_RS00615GCF_001543565#AWN56_RS00615
HKClassic
8 130-9 500 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001543555#AWN51_RS03755Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1642395
Simplified PFAM architecture for RROC_1642395
PFAM domain coverage: 181 / 222 aa (81.5%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1642395
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_001543555#AWN51_RS03755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 352 · GCF_001543565
AssemblyASM154356v1 · Scaffoldhaploid
Genome composition3 016 176 bp · 38,0% GCEnterococcus faecium
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key