1 HisKA_3#1
141-206 aa · 66 aa · 19.0% of protein
Raw token
HisKA_3:141:9.75e-17:206:66:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS11935
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406835
ClassHKTypeClassicLength347 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS11935Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length347 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 347 aa (47.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa347 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
247-343 aa · 97 aa · 28.0% of protein
Raw token
HATPase_c:247:1.33e-21:343:106:109- Raw architecture: HisKA_3:141:9.75e-17:206:66:68#HATPase_c:247:1.33e-21:343:106:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000028.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span34875-36566Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_25761RefSeq proteinWP_055062501.1
Context group ID
GCF_001406835::NZ_CVRQ01000028.1::G00027Context members
T1815_RS11930T1815_RS11935
Partner locus tags
T1815_RS11930T1815_RS11935
Partner old locus tags
T1815_25751T1815_25761
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055062501.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WTQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WTQ1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS11935Primary locus identifier stored in the genes table.
Old locus tagT1815_25761Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000028.1Sequence record reported by the local genomic context database.
Genomic interval35 523-36 566 nt1 044 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span34 875-36 566 ntGCF_001406835::NZ_CVRQ01000028.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000028.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000028.1All displayed genes belong to this local TCS context.
Neighborhood span34 875-36 566 nt1 692 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 875 nt36 566 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS11930GCF_001406835#T1815_RS11930
RRNarL
34 875-35 519 nt · Reverse (-)
T1815_RS11935GCF_001406835#T1815_RS11935
HKClassicCurrent focus
35 523-36 566 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406835#T1815_RS11935The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2810786
Simplified PFAM architecture for HKOC_2810786
PFAM domain coverage: 162 / 347 aa (46.7%)
1 aa347 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[141-206] | HATPase_c[249-344]
- Domain count: 2
- Matched identifier: HKOC_2810786
- Positioned domains: HisKA_3 141-206 ; HATPase_c 249-344
Cluster members and taxonomy
Representative gene: GCF_001406835#T1815_RS11935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key