1 HisKA#1
124-189 aa · 66 aa · 19.3% of protein
Raw token
HisKA:124:0.0000183:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS00275
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406835
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS00275Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 342 aa (50.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-341 aa · 107 aa · 31.3% of protein
Raw token
HATPase_c:235:9.42e-29:341:107:109- Raw architecture: HisKA:124:0.0000183:189:66:64#HATPase_c:235:9.42e-29:341:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span58263-59971Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_02671RefSeq proteinWP_055060858.1
Context group ID
GCF_001406835::NZ_CVRQ01000001.1::G00003Context members
T1815_RS00275T1815_RS00280
Partner locus tags
T1815_RS00275T1815_RS00280
Partner old locus tags
T1815_02671T1815_02681
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055060858.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6W991Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6W991_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS00275Primary locus identifier stored in the genes table.
Old locus tagT1815_02671Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval58 263-59 291 nt1 029 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span58 263-59 971 ntGCF_001406835::NZ_CVRQ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span58 263-59 971 nt1 709 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
58 263 nt59 971 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS00275GCF_001406835#T1815_RS00275
HKClassicCurrent focus
58 263-59 291 nt · Reverse (-)
T1815_RS00280GCF_001406835#T1815_RS00280
RROmpR
59 288-59 971 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875635#GT565_RS09490Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2829347
Simplified PFAM architecture for HKOC_2829347
PFAM domain coverage: 108 / 343 aa (31.5%)
1 aa343 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[235-342]
- Domain count: 1
- Matched identifier: HKOC_2829347
- Positioned domains: HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_009875635#GT565_RS09490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key