1 HAMP#1
278-347 aa · 70 aa · 11.8% of protein
Raw token
HAMP:278:0.000000341:347:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS00055
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406835
ClassHKTypeClassicLength595 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS00055Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length595 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage262 / 595 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa595 aa
Domain-by-domain annotation3 items
2 His_kinase#2
363-438 aa · 76 aa · 12.8% of protein
Raw token
His_kinase:363:1.76e-27:438:76:803 HATPase_c#3
452-567 aa · 116 aa · 19.5% of protein
Raw token
HATPase_c:452:1.09e-16:567:116:109- Raw architecture: HAMP:278:0.000000341:347:70:69#His_kinase:363:1.76e-27:438:76:80#HATPase_c:452:1.09e-16:567:116:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11972-14765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_02231RefSeq proteinWP_306778292.1
Context group ID
GCF_001406835::NZ_CVRQ01000001.1::G00001Context members
T1815_RS00055T1815_RS00060
Partner locus tags
T1815_RS00055T1815_RS00060
Partner old locus tags
T1815_02231T1815_02241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_306778292.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS00055Primary locus identifier stored in the genes table.
Old locus tagT1815_02231Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval11 972-13 759 nt1 788 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 972-14 765 ntGCF_001406835::NZ_CVRQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span11 972-14 765 nt2 794 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 972 nt14 765 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS00055GCF_001406835#T1815_RS00055
HKClassicCurrent focus
11 972-13 759 nt · Forward (+)
T1815_RS00060GCF_001406835#T1815_RS00060
RRunclassified
13 737-14 765 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406835#T1815_RS00055The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1080454
Simplified PFAM architecture for HKOC_1080454
PFAM domain coverage: 191 / 595 aa (32.1%)
1 aa595 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[363-438] | HATPase_c[452-566]
- Domain count: 2
- Matched identifier: HKOC_1080454
- Positioned domains: His_kinase 363-438 ; HATPase_c 452-566
Cluster members and taxonomy
Representative gene: GCF_001406835#T1815_RS00055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key