1 Response_reg#1
3-120 aa · 118 aa · 34.5% of protein
Raw token
Response_reg:3:1.3e-28:120:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS00060
Response regulator, unclassified
Agathobacter rectalis · GCF_001406835
ClassRRTypeunclassifiedLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS00060Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 342 aa (55.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
249-285 aa · 37 aa · 10.8% of protein
Raw token
HTH_AraC:249:0.00000000303:285:37:423 HTH_AraC#3
302-337 aa · 36 aa · 10.5% of protein
Raw token
HTH_AraC:302:0.00000598:337:36:42- Raw architecture: Response_reg:3:1.3e-28:120:118:111#HTH_AraC:249:0.00000000303:285:37:42#HTH_AraC:302:0.00000598:337:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11972-14765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_02241RefSeq proteinWP_055060829.1
Context group ID
GCF_001406835::NZ_CVRQ01000001.1::G00001Context members
T1815_RS00055T1815_RS00060
Partner locus tags
T1815_RS00055T1815_RS00060
Partner old locus tags
T1815_02231T1815_02241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055060829.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6W8U6Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6W8U6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS00060Primary locus identifier stored in the genes table.
Old locus tagT1815_02241Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000001.1Sequence record reported by the local genomic context database.
Genomic interval13 737-14 765 nt1 029 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 972-14 765 ntGCF_001406835::NZ_CVRQ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span11 972-14 765 nt2 794 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 972 nt14 765 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS00055GCF_001406835#T1815_RS00055
HKClassic
11 972-13 759 nt · Forward (+)
T1815_RS00060GCF_001406835#T1815_RS00060
RRunclassifiedCurrent focus
13 737-14 765 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406835#T1815_RS00060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0497461
Simplified PFAM architecture for RROC_0497461
PFAM domain coverage: 181 / 342 aa (52.9%)
1 aa342 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[260-337]
- Domain count: 2
- Matched identifier: RROC_0497461
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 260-337 ; HTH_18 260-337
Cluster members and taxonomy
Representative gene: GCF_001406835#T1815_RS00060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key