1 HAMP#1
179-242 aa · 64 aa · 13.4% of protein
Raw token
HAMP:179:0.00000000000000768:242:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS07205
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406835
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS07205Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 477 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-318 aa · 65 aa · 13.6% of protein
Raw token
HisKA:254:0.000000000251:318:65:643 HATPase_c#3
365-472 aa · 108 aa · 22.6% of protein
Raw token
HATPase_c:365:1.82e-27:472:109:109- Raw architecture: HAMP:179:0.00000000000000768:242:64:69#HisKA:254:0.000000000251:318:65:64#HATPase_c:365:1.82e-27:472:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000019.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48760-50852Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_16231RefSeq proteinWP_055061809.1
Context group ID
GCF_001406835::NZ_CVRQ01000019.1::G00020Context members
T1815_RS07205T1815_RS07210
Partner locus tags
T1815_RS07205T1815_RS07210
Partner old locus tags
T1815_16231T1815_16241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055061809.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WN55Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WN55_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS07205Primary locus identifier stored in the genes table.
Old locus tagT1815_16231Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000019.1Sequence record reported by the local genomic context database.
Genomic interval48 760-50 193 nt1 434 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span48 760-50 852 ntGCF_001406835::NZ_CVRQ01000019.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000019.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000019.1All displayed genes belong to this local TCS context.
Neighborhood span48 760-50 852 nt2 093 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 760 nt50 852 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS07205GCF_001406835#T1815_RS07205
HKClassicCurrent focus
48 760-50 193 nt · Reverse (-)
T1815_RS07210GCF_001406835#T1815_RS07210
RROmpR
50 190-50 852 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406835#T1815_RS07205The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1646486
Simplified PFAM architecture for HKOC_1646486
PFAM domain coverage: 218 / 477 aa (45.7%)
1 aa477 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[192-242] | HisKA[255-315] | HATPase_c[366-471]
- Domain count: 3
- Matched identifier: HKOC_1646486
- Positioned domains: HAMP 192-242 ; HisKA 255-315 ; HATPase_c 366-471
Cluster members and taxonomy
Representative gene: GCF_001406835#T1815_RS07205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key