1 HAMP#1
132-198 aa · 67 aa · 15.7% of protein
Raw token
HAMP:132:0.0000000135:198:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS03415
Histidine kinase, Classic
Agathobacter rectalis · GCF_001406835
ClassHKTypeClassicLength427 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS03415Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length427 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 427 aa (56.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa427 aa
Domain-by-domain annotation3 items
2 HisKA#2
209-278 aa · 70 aa · 16.4% of protein
Raw token
HisKA:209:0.0000000771:278:70:643 HATPase_c#3
324-425 aa · 102 aa · 23.9% of protein
Raw token
HATPase_c:324:0.000000000000277:425:104:109- Raw architecture: HAMP:132:0.0000000135:198:69:69#HisKA:209:0.0000000771:278:70:64#HATPase_c:324:0.000000000000277:425:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000011.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54375-56320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_08671RefSeq proteinWP_055061267.1
Context group ID
GCF_001406835::NZ_CVRQ01000011.1::G00013Context members
T1815_RS03410T1815_RS03415
Partner locus tags
T1815_RS03410T1815_RS03415
Partner old locus tags
T1815_08661T1815_08671
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055061267.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WEG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WEG4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS03415Primary locus identifier stored in the genes table.
Old locus tagT1815_08671Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000011.1Sequence record reported by the local genomic context database.
Genomic interval55 037-56 320 nt1 284 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 375-56 320 ntGCF_001406835::NZ_CVRQ01000011.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000011.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span54 375-56 320 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 375 nt56 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS03410GCF_001406835#T1815_RS03410
RROmpR
54 375-55 052 nt · Forward (+)
T1815_RS03415GCF_001406835#T1815_RS03415
HKClassicCurrent focus
55 037-56 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404855#AQ987_RS10300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2199935
Simplified PFAM architecture for HKOC_2199935
PFAM domain coverage: 220 / 427 aa (51.5%)
1 aa427 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[146-197] | HisKA[210-277] | HATPase_c[324-423]
- Domain count: 3
- Matched identifier: HKOC_2199935
- Positioned domains: HAMP 146-197 ; HisKA 210-277 ; HATPase_c 324-423
Cluster members and taxonomy
Representative gene: GCF_001404855#AQ987_RS10300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key