1 Response_reg#1
5-113 aa · 109 aa · 48.4% of protein
Raw token
Response_reg:5:2.62e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
T1815_RS03410
Response regulator OmpR family
Agathobacter rectalis · GCF_001406835
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406835#T1815_RS03410Stable P2CS identifier used across views.
GenomeGCF_001406835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:6.26e-28:222:77:77- Raw architecture: Response_reg:5:2.62e-38:113:111:111#Trans_reg_C:147:6.26e-28:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406835::NZ_CVRQ01000011.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54375-56320Genomic interval covered by the local TCS group.
Identifiers
Old locus tagT1815_08661RefSeq proteinWP_055061266.1
Context group ID
GCF_001406835::NZ_CVRQ01000011.1::G00013Context members
T1815_RS03410T1815_RS03415
Partner locus tags
T1815_RS03410T1815_RS03415
Partner old locus tags
T1815_08661T1815_08671
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055061266.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WFJ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WFJ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagT1815_RS03410Primary locus identifier stored in the genes table.
Old locus tagT1815_08661Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRQ01000011.1Sequence record reported by the local genomic context database.
Genomic interval54 375-55 052 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 375-56 320 ntGCF_001406835::NZ_CVRQ01000011.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406835::NZ_CVRQ01000011.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRQ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span54 375-56 320 nt1 946 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 375 nt56 320 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
T1815_RS03410GCF_001406835#T1815_RS03410
RROmpRCurrent focus
54 375-55 052 nt · Forward (+)
T1815_RS03415GCF_001406835#T1815_RS03415
HKClassic
55 037-56 320 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404855#AQ987_RS10305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1470804
Simplified PFAM architecture for RROC_1470804
PFAM domain coverage: 181 / 225 aa (80.4%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[149-221]
- Domain count: 2
- Matched identifier: RROC_1470804
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 149-221 ; Trans_reg_C 149-221
Cluster members and taxonomy
Representative gene: GCF_001404855#AQ987_RS10305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_001406835
AssemblyT1815 · Contighaploid
Genome composition3 045 135 bp · 42,0% GCAgathobacter rectalis
Signal transduction countsGenes 61 · HK 29 · RR 30CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key