1 CheW#1
15-149 aa · 135 aa · 44.9% of protein
Raw token
CheW:15:7.24e-33:149:137:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS10815
Response regulator CheV family
Roseburia faecis · GCF_001406815
ClassRRTypeCheVLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406815#M72_RS10815Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage256 / 301 aa (85.0%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 Response_reg#2
173-293 aa · 121 aa · 40.2% of protein
Raw token
Response_reg:173:3.87e-23:293:122:111- Raw architecture: CheW:15:7.24e-33:149:137:138#Response_reg:173:3.87e-23:293:122:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406815::NZ_CVRR01000033.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span147870-148775Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_09321RefSeq proteinWP_055068231.1
Context group ID
GCF_001406815::NZ_CVRR01000033.1::G00043Context members
M72_RS10815
Partner locus tags
M72_RS10815
Partner old locus tags
M72_09321
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068231.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WUE8Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WUE8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS10815Primary locus identifier stored in the genes table.
Old locus tagM72_09321Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000033.1Sequence record reported by the local genomic context database.
Genomic interval147 870-148 775 nt906 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span147 870-148 775 ntGCF_001406815::NZ_CVRR01000033.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000033.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000033.1All displayed genes belong to this local TCS context.
Neighborhood span147 870-148 775 nt906 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 870 nt148 775 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M72_RS10815GCF_001406815#M72_RS10815
RRCheVCurrent focus
147 870-148 775 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS10815The current gene is the representative for this cluster.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0570340
Simplified PFAM architecture for RROC_0570340
PFAM domain coverage: 253 / 301 aa (84.1%)
1 aa301 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[16-148] | Response_reg[173-292]
- Domain count: 2
- Matched identifier: RROC_0570340
- Positioned domains: CheW 16-148 ; CheW 16-148 ; Response_reg 173-292 ; Response_reg 173-292
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS10815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key