1 Response_reg#1
4-113 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:4:6e-18:113:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
M72_RS00385
Response regulator LytTR family
Roseburia faecis · GCF_001406815
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406815#M72_RS00385Stable P2CS identifier used across views.
GenomeGCF_001406815Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 237 aa (84.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-226 aa · 90 aa · 38.0% of protein
Raw token
LytTR:137:5.85e-17:226:96:98- Raw architecture: Response_reg:4:6e-18:113:115:111#LytTR:137:5.85e-17:226:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406815::NZ_CVRR01000003.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75027-75740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagM72_19611RefSeq proteinWP_070103622.1
Context group ID
GCF_001406815::NZ_CVRR01000003.1::G00002Context members
M72_RS00385
Partner locus tags
M72_RS00385
Partner old locus tags
M72_19611
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_070103622.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagM72_RS00385Primary locus identifier stored in the genes table.
Old locus tagM72_19611Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CVRR01000003.1Sequence record reported by the local genomic context database.
Genomic interval75 027-75 740 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 027-75 740 ntGCF_001406815::NZ_CVRR01000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406815::NZ_CVRR01000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CVRR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span75 027-75 740 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 027 nt75 740 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
M72_RS00385GCF_001406815#M72_RS00385
RRLytTRCurrent focus
75 027-75 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS09370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0845830
Simplified PFAM architecture for RROC_0845830
PFAM domain coverage: 202 / 242 aa (83.5%)
1 aa242 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[9-119] | LytTR[143-233]
- Domain count: 2
- Matched identifier: RROC_0845830
- Positioned domains: Response_reg 9-119 ; Response_reg 9-119 ; LytTR 143-233 ; LytTR 143-233
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS09370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_001406815
AssemblyM72 · Contighaploid
Genome composition3 334 694 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 47 · RR 61CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key