1 Response_reg#1
4-116 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:4:8.61e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS09745
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS09745Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 531 aa (29.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
435-475 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:435:0.0000177:475:41:42- Raw architecture: Response_reg:4:8.61e-25:116:113:111#HTH_AraC:435:0.0000177:475:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000010.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9300-12615Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_01985RefSeq proteinWP_055227829.1
Context group ID
GCF_001406335::NZ_CZAL01000010.1::G00027Context members
ARA47_RS09740ARA47_RS09745
Partner locus tags
ARA47_RS09740ARA47_RS09745
Partner old locus tags
ERS852498_01984ERS852498_01985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055227829.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ENW6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ENW6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS09745Primary locus identifier stored in the genes table.
Old locus tagERS852498_01985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000010.1Sequence record reported by the local genomic context database.
Genomic interval11 020-12 615 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 300-12 615 ntGCF_001406335::NZ_CZAL01000010.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000010.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000010.1All displayed genes belong to this local TCS context.
Neighborhood span9 300-12 615 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 300 nt12 615 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS09740GCF_001406335#ARA47_RS09740
HKClassic
9 300-11 042 nt · Forward (+)
ARA47_RS09745GCF_001406335#ARA47_RS09745
RRunclassifiedCurrent focus
11 020-12 615 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS09095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109773
Simplified PFAM architecture for RROC_0109773
PFAM domain coverage: 187 / 531 aa (35.2%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[453-526]
- Domain count: 2
- Matched identifier: RROC_0109773
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 453-526 ; HTH_18 453-526
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS09095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key