1 Response_reg#1
3-112 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:3:5.04e-16:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS01180
Response regulator LytTR family
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406335#ARA47_RS01180Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage202 / 238 aa (84.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.7% of protein
Raw token
LytTR:139:0.0000000000000156:230:97:98- Raw architecture: Response_reg:3:5.04e-16:112:112:111#LytTR:139:0.0000000000000156:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406335::NZ_CZAL01000001.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span255667-256383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00241RefSeq proteinWP_055264998.1
Context group ID
GCF_001406335::NZ_CZAL01000001.1::G00005Context members
ARA47_RS01180
Partner locus tags
ARA47_RS01180
Partner old locus tags
ERS852498_00241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055264998.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H1V7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H1V7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS01180Primary locus identifier stored in the genes table.
Old locus tagERS852498_00241Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000001.1Sequence record reported by the local genomic context database.
Genomic interval255 667-256 383 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span255 667-256 383 ntGCF_001406335::NZ_CZAL01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span255 667-256 383 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
255 667 nt256 383 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA47_RS01180GCF_001406335#ARA47_RS01180
RRLytTRCurrent focus
255 667-256 383 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS01180The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936240
Simplified PFAM architecture for RROC_0936240
PFAM domain coverage: 202 / 238 aa (84.9%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-114] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0936240
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS01180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key