1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:1.21e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS00780
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS00780Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.42e-36:227:77:77- Raw architecture: Response_reg:5:1.21e-38:114:111:111#Trans_reg_C:151:1.42e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157619-159731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00156RefSeq proteinWP_055218609.1
Context group ID
GCF_001406335::NZ_CZAL01000001.1::G00001Context members
ARA47_RS00775ARA47_RS00780
Partner locus tags
ARA47_RS00775ARA47_RS00780
Partner old locus tags
ERS852498_00155ERS852498_00156
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055218609.1Primary protein accession used for annex mappings.
UniProt accessionA0A174GVG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174GVG8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS00780Primary locus identifier stored in the genes table.
Old locus tagERS852498_00156Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000001.1Sequence record reported by the local genomic context database.
Genomic interval159 042-159 731 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 619-159 731 ntGCF_001406335::NZ_CZAL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span157 619-159 731 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 619 nt159 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS00775GCF_001406335#ARA47_RS00775
HKClassic
157 619-159 097 nt · Reverse (-)
ARA47_RS00780GCF_001406335#ARA47_RS00780
RROmpRCurrent focus
159 042-159 731 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS07120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253468
Simplified PFAM architecture for RROC_1253468
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1253468
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS07120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key