1 HAMP#1
97-167 aa · 71 aa · 18.2% of protein
Raw token
HAMP:97:0.000000000331:167:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS01115
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001406335
ClassHKTypeClassicLength390 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS01115Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length390 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 390 aa (63.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa390 aa
Domain-by-domain annotation3 items
2 HisKA#2
172-238 aa · 67 aa · 17.2% of protein
Raw token
HisKA:172:0.0000000000288:238:67:643 HATPase_c#3
280-388 aa · 109 aa · 27.9% of protein
Raw token
HATPase_c:280:6.48e-34:388:109:109- Raw architecture: HAMP:97:0.000000000331:167:71:69#HisKA:172:0.0000000000288:238:67:64#HATPase_c:280:6.48e-34:388:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span240692-242541Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00228RefSeq proteinWP_055264972.1
Context group ID
GCF_001406335::NZ_CZAL01000001.1::G00003Context members
ARA47_RS01110ARA47_RS01115
Partner locus tags
ARA47_RS01110ARA47_RS01115
Partner old locus tags
ERS852498_00227ERS852498_00228
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055264972.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H098Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H098_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS01115Primary locus identifier stored in the genes table.
Old locus tagERS852498_00228Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000001.1Sequence record reported by the local genomic context database.
Genomic interval241 369-242 541 nt1 173 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span240 692-242 541 ntGCF_001406335::NZ_CZAL01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span240 692-242 541 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
240 692 nt242 541 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS01110GCF_001406335#ARA47_RS01110
RROmpR
240 692-241 372 nt · Forward (+)
ARA47_RS01115GCF_001406335#ARA47_RS01115
HKClassicCurrent focus
241 369-242 541 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS01115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2528041
Simplified PFAM architecture for HKOC_2528041
PFAM domain coverage: 172 / 390 aa (44.1%)
1 aa390 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[172-237] | HATPase_c[283-388]
- Domain count: 2
- Matched identifier: HKOC_2528041
- Positioned domains: HisKA 172-237 ; HATPase_c 283-388
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS01115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key