1 HAMP#1
211-279 aa · 69 aa · 13.0% of protein
Raw token
HAMP:211:5.51e-19:279:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS08110
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001406335
ClassHKTypeClassicLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS08110Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 532 aa (46.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-371 aa · 68 aa · 12.8% of protein
Raw token
HisKA:304:0.00000000000000259:371:68:643 HATPase_c#3
416-523 aa · 108 aa · 20.3% of protein
Raw token
HATPase_c:416:2.76e-16:523:109:109- Raw architecture: HAMP:211:5.51e-19:279:69:69#HisKA:304:0.00000000000000259:371:68:64#HATPase_c:416:2.76e-16:523:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000008.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25745-28023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_01654RefSeq proteinWP_242857208.1
Context group ID
GCF_001406335::NZ_CZAL01000008.1::G00023Context members
ARA47_RS08105ARA47_RS08110
Partner locus tags
ARA47_RS08105ARA47_RS08110
Partner old locus tags
ERS852498_01653ERS852498_01654
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242857208.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LYW3Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LYW3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS08110Primary locus identifier stored in the genes table.
Old locus tagERS852498_01654Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000008.1Sequence record reported by the local genomic context database.
Genomic interval26 425-28 023 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 745-28 023 ntGCF_001406335::NZ_CZAL01000008.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000008.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000008.1All displayed genes belong to this local TCS context.
Neighborhood span25 745-28 023 nt2 279 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 745 nt28 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS08105GCF_001406335#ARA47_RS08105
RROmpR
25 745-26 428 nt · Forward (+)
ARA47_RS08110GCF_001406335#ARA47_RS08110
HKClassicCurrent focus
26 425-28 023 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS08110The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1348814
Simplified PFAM architecture for HKOC_1348814
PFAM domain coverage: 228 / 532 aa (42.9%)
1 aa532 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[228-279] | HisKA[304-369] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1348814
- Positioned domains: HAMP 228-279 ; HisKA 304-369 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS08110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key