1 Response_reg#1
5-118 aa · 114 aa · 21.9% of protein
Raw token
Response_reg:5:9.18e-22:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS07190
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeunclassifiedLength520 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406335#ARA47_RS07190Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length520 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 520 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa520 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
481-516 aa · 36 aa · 6.9% of protein
Raw token
HTH_AraC:481:0.0000000658:516:36:42- Raw architecture: Response_reg:5:9.18e-22:118:114:111#HTH_AraC:481:0.0000000658:516:36:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406335::NZ_CZAL01000007.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30228-31790Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_01463RefSeq proteinWP_055266368.1
Context group ID
GCF_001406335::NZ_CZAL01000007.1::G00021Context members
ARA47_RS07190
Partner locus tags
ARA47_RS07190
Partner old locus tags
ERS852498_01463
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055266368.1Primary protein accession used for annex mappings.
UniProt accessionA0A174L8C8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174L8C8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS07190Primary locus identifier stored in the genes table.
Old locus tagERS852498_01463Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000007.1Sequence record reported by the local genomic context database.
Genomic interval30 228-31 790 nt1 563 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 228-31 790 ntGCF_001406335::NZ_CZAL01000007.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000007.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000007.1All displayed genes belong to this local TCS context.
Neighborhood span30 228-31 790 nt1 563 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 228 nt31 790 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA47_RS07190GCF_001406335#ARA47_RS07190
RRunclassifiedCurrent focus
30 228-31 790 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS07190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0125996
Simplified PFAM architecture for RROC_0125996
PFAM domain coverage: 193 / 520 aa (37.1%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-117] | HTH_18[439-518]
- Domain count: 2
- Matched identifier: RROC_0125996
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; HTH_18 439-518 ; HTH_18 439-518
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS07190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key