1 Response_reg#1
15-99 aa · 85 aa · 65.4% of protein
Raw token
Response_reg:15:0.0000316:99:87:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS06730
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeCheYLength130 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406335#ARA47_RS06730Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length130 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage85 / 130 aa (65.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa130 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:15:0.0000316:99:87:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406335::NZ_CZAL01000006.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span127401-127793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_01365RefSeq proteinWP_055228083.1
Context group ID
GCF_001406335::NZ_CZAL01000006.1::G00019Context members
ARA47_RS06730
Partner locus tags
ARA47_RS06730
Partner old locus tags
ERS852498_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055228083.1Primary protein accession used for annex mappings.
UniProt accessionA0A174G0I2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174G0I2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS06730Primary locus identifier stored in the genes table.
Old locus tagERS852498_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000006.1Sequence record reported by the local genomic context database.
Genomic interval127 401-127 793 nt393 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span127 401-127 793 ntGCF_001406335::NZ_CZAL01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span127 401-127 793 nt393 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
127 401 nt127 793 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA47_RS06730GCF_001406335#ARA47_RS06730
RRCheYCurrent focus
127 401-127 793 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS11145Use this link to inspect the representative gene detail.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2322608
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS11145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key