1 dCache_1#1
41-257 aa · 217 aa · 38.1% of protein
Raw token
dCache_1:41:0.0000000031:257:219:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS06275
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001406335
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS06275Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage472 / 570 aa (82.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation4 items
2 HAMP#2
287-356 aa · 70 aa · 12.3% of protein
Raw token
HAMP:287:0.0000000000000486:356:70:693 His_kinase#3
371-450 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:371:7.34e-30:450:80:804 HATPase_c#4
464-568 aa · 105 aa · 18.4% of protein
Raw token
HATPase_c:464:2.57e-18:568:111:109- Raw architecture: dCache_1:41:0.0000000031:257:219:195#HAMP:287:0.0000000000000486:356:70:69#His_kinase:371:7.34e-30:450:80:80#HATPase_c:464:2.57e-18:568:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000006.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8143-11248Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_01273RefSeq proteinWP_055266125.1
Context group ID
GCF_001406335::NZ_CZAL01000006.1::G00017Context members
ARA47_RS06270ARA47_RS06275
Partner locus tags
ARA47_RS06270ARA47_RS06275
Partner old locus tags
ERS852498_01272ERS852498_01273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055266125.1Primary protein accession used for annex mappings.
UniProt accessionA0A174KPI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174KPI0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS06275Primary locus identifier stored in the genes table.
Old locus tagERS852498_01273Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000006.1Sequence record reported by the local genomic context database.
Genomic interval9 536-11 248 nt1 713 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 143-11 248 ntGCF_001406335::NZ_CZAL01000006.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000006.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span8 143-11 248 nt3 106 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 143 nt11 248 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS06270GCF_001406335#ARA47_RS06270
RRunclassified
8 143-9 558 nt · Forward (+)
ARA47_RS06275GCF_001406335#ARA47_RS06275
HKClassicCurrent focus
9 536-11 248 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS06275The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1212357
Simplified PFAM architecture for HKOC_1212357
PFAM domain coverage: 235 / 570 aa (41.2%)
1 aa570 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[305-356] | His_kinase[372-449] | HATPase_c[465-569]
- Domain count: 3
- Matched identifier: HKOC_1212357
- Positioned domains: HAMP 305-356 ; His_kinase 372-449 ; HATPase_c 465-569
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS06275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key