1 Response_reg#1
6-113 aa · 108 aa · 43.9% of protein
Raw token
Response_reg:6:1.19e-23:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS03510
Response regulator LytTR family
Fusicatenibacter saccharivorans · GCF_001406335
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406335#ARA47_RS03510Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage205 / 246 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-237 aa · 97 aa · 39.4% of protein
Raw token
LytTR:141:5.36e-21:237:102:98- Raw architecture: Response_reg:6:1.19e-23:113:110:111#LytTR:141:5.36e-21:237:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406335::NZ_CZAL01000003.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span89371-90111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00712RefSeq proteinWP_055265561.1
Context group ID
GCF_001406335::NZ_CZAL01000003.1::G00013Context members
ARA47_RS03510
Partner locus tags
ARA47_RS03510
Partner old locus tags
ERS852498_00712
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055265561.1Primary protein accession used for annex mappings.
UniProt accessionA0A174IQ09Primary UniProt accession resolved in the annex database.
UniProt IDA0A174IQ09_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS03510Primary locus identifier stored in the genes table.
Old locus tagERS852498_00712Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000003.1Sequence record reported by the local genomic context database.
Genomic interval89 371-90 111 nt741 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span89 371-90 111 ntGCF_001406335::NZ_CZAL01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span89 371-90 111 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 371 nt90 111 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA47_RS03510GCF_001406335#ARA47_RS03510
RRLytTRCurrent focus
89 371-90 111 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS03510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0771678
Simplified PFAM architecture for RROC_0771678
PFAM domain coverage: 206 / 246 aa (83.7%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-114] | LytTR[141-236]
- Domain count: 2
- Matched identifier: RROC_0771678
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; LytTR 141-236 ; LytTR 141-236
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS03510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key