1 HisKA#1
325-391 aa · 67 aa · 9.4% of protein
Raw token
HisKA:325:2.44e-17:391:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS01430
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_001406335
ClassHKTypeHybridLength713 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406335#ARA47_RS01430Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 713 aa (42.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
438-556 aa · 119 aa · 16.7% of protein
Raw token
HATPase_c:438:4.68e-28:556:119:1093 Response_reg#3
584-700 aa · 117 aa · 16.4% of protein
Raw token
Response_reg:584:1.07e-26:700:117:111- Raw architecture: HisKA:325:2.44e-17:391:67:64#HATPase_c:438:4.68e-28:556:119:109#Response_reg:584:1.07e-26:700:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406335::NZ_CZAL01000001.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span304467-306608Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00291RefSeq proteinWP_055265241.1
Context group ID
GCF_001406335::NZ_CZAL01000001.1::G00006Context members
ARA47_RS01430
Partner locus tags
ARA47_RS01430
Partner old locus tags
ERS852498_00291
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055265241.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS01430Primary locus identifier stored in the genes table.
Old locus tagERS852498_00291Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000001.1Sequence record reported by the local genomic context database.
Genomic interval304 467-306 608 nt2 142 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span304 467-306 608 ntGCF_001406335::NZ_CZAL01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span304 467-306 608 nt2 142 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
304 467 nt306 608 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA47_RS01430GCF_001406335#ARA47_RS01430
HKHybridCurrent focus
304 467-306 608 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS01430The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0745647
Simplified PFAM architecture for HKOC_0745647
PFAM domain coverage: 301 / 713 aa (42.2%)
1 aa713 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[325-391] | HATPase_c[438-555] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0745647
- Positioned domains: HisKA 325-391 ; HATPase_c 438-555 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS01430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key