1 HAMP#1
194-262 aa · 69 aa · 14.0% of protein
Raw token
HAMP:194:0.000000000239:262:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA47_RS00775
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_001406335
ClassHKTypeClassicLength492 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406335#ARA47_RS00775Stable P2CS identifier used across views.
GenomeGCF_001406335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length492 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 492 aa (49.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa492 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-331 aa · 66 aa · 13.4% of protein
Raw token
HisKA:266:0.00000000000753:331:66:643 HATPase_c#3
379-488 aa · 110 aa · 22.4% of protein
Raw token
HATPase_c:379:6.4e-29:488:110:109- Raw architecture: HAMP:194:0.000000000239:262:69:69#HisKA:266:0.00000000000753:331:66:64#HATPase_c:379:6.4e-29:488:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406335::NZ_CZAL01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157619-159731Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852498_00155RefSeq proteinWP_242857167.1
Context group ID
GCF_001406335::NZ_CZAL01000001.1::G00001Context members
ARA47_RS00775ARA47_RS00780
Partner locus tags
ARA47_RS00775ARA47_RS00780
Partner old locus tags
ERS852498_00155ERS852498_00156
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242857167.1Primary protein accession used for annex mappings.
UniProt accessionA0A174GYL9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174GYL9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA47_RS00775Primary locus identifier stored in the genes table.
Old locus tagERS852498_00155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZAL01000001.1Sequence record reported by the local genomic context database.
Genomic interval157 619-159 097 nt1 479 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 619-159 731 ntGCF_001406335::NZ_CZAL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406335::NZ_CZAL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZAL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span157 619-159 731 nt2 113 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 619 nt159 731 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA47_RS00775GCF_001406335#ARA47_RS00775
HKClassicCurrent focus
157 619-159 097 nt · Reverse (-)
ARA47_RS00780GCF_001406335#ARA47_RS00780
RROmpR
159 042-159 731 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS00775The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1521540
Simplified PFAM architecture for HKOC_1521540
PFAM domain coverage: 176 / 492 aa (35.8%)
1 aa492 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[266-331] | HATPase_c[379-488]
- Domain count: 2
- Matched identifier: HKOC_1521540
- Positioned domains: HisKA 266-331 ; HATPase_c 379-488
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS00775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_001406335
Assembly14207_7#8 · Scaffoldhaploid
Genome composition3 878 672 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 87 · HK 38 · RR 45CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key