1 HisKA#1
14-83 aa · 70 aa · 29.8% of protein
Raw token
HisKA:14:0.00000000267:83:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS15140
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS15140Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 235 aa (72.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
131-230 aa · 100 aa · 42.6% of protein
Raw token
HATPase_c:131:5.18e-24:230:101:109- Raw architecture: HisKA:14:0.00000000267:83:70:64#HATPase_c:131:5.18e-24:230:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000004.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span93578-94285Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_01460RefSeq proteinWP_242859639.1
Context group ID
GCF_001406175::NZ_CYYJ01000004.1::G00018Context members
ARA20_RS15140
Partner locus tags
ARA20_RS15140
Partner old locus tags
ERS852400_01460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242859639.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS15140Primary locus identifier stored in the genes table.
Old locus tagERS852400_01460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000004.1Sequence record reported by the local genomic context database.
Genomic interval93 578-94 285 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 578-94 285 ntGCF_001406175::NZ_CYYJ01000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span93 578-94 285 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 578 nt94 285 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS15140GCF_001406175#ARA20_RS15140
HKClassicCurrent focus
93 578-94 285 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS15140The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2924623
Simplified PFAM architecture for HKOC_2924623
PFAM domain coverage: 170 / 235 aa (72.3%)
1 aa235 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[15-82] | HATPase_c[130-231]
- Domain count: 2
- Matched identifier: HKOC_2924623
- Positioned domains: HisKA 15-82 ; HATPase_c 130-231
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS15140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key