1 Response_reg#1
4-119 aa · 116 aa · 47.0% of protein
Raw token
Response_reg:4:0.0000000537:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS00185
Response regulator LytTR family
Coprococcus eutactus · GCF_001406175
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS00185Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 247 aa (85.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-234 aa · 95 aa · 38.5% of protein
Raw token
LytTR:140:0.00000000000000201:234:100:98- Raw architecture: Response_reg:4:0.0000000537:119:118:111#LytTR:140:0.00000000000000201:234:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44875-45618Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_00036RefSeq proteinWP_055222252.1
Context group ID
GCF_001406175::NZ_CYYJ01000001.1::G00001Context members
ARA20_RS00185
Partner locus tags
ARA20_RS00185
Partner old locus tags
ERS852400_00036
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055222252.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K7R2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K7R2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS00185Primary locus identifier stored in the genes table.
Old locus tagERS852400_00036Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval44 875-45 618 nt744 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 875-45 618 ntGCF_001406175::NZ_CYYJ01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span44 875-45 618 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 875 nt45 618 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS00185GCF_001406175#ARA20_RS00185
RRLytTRCurrent focus
44 875-45 618 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404675#ARA78_RS05540Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0757783
Simplified PFAM architecture for RROC_0757783
PFAM domain coverage: 206 / 247 aa (83.4%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-118] | LytTR[144-234]
- Domain count: 2
- Matched identifier: RROC_0757783
- Positioned domains: Response_reg 4-118 ; Response_reg 4-118 ; LytTR 144-234 ; LytTR 144-234
Cluster members and taxonomy
Representative gene: GCF_001404675#ARA78_RS05540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key