1 Response_reg#1
6-114 aa · 109 aa · 20.4% of protein
Raw token
Response_reg:6:6.87e-25:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS01520
Response regulator, unclassified
Coprococcus eutactus · GCF_001406175
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS01520Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage174 / 535 aa (32.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-479 aa · 35 aa · 6.5% of protein
Raw token
HTH_AraC:445:0.00000000479:479:35:423 HTH_AraC#3
500-529 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:500:0.0000000166:529:30:42- Raw architecture: Response_reg:6:6.87e-25:114:109:111#HTH_AraC:445:0.00000000479:479:35:42#HTH_AraC:500:0.0000000166:529:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338562-342106Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_00312RefSeq proteinWP_055222389.1
Context group ID
GCF_001406175::NZ_CYYJ01000001.1::G00004Context members
ARA20_RS01520ARA20_RS01525
Partner locus tags
ARA20_RS01520ARA20_RS01525
Partner old locus tags
ERS852400_00312ERS852400_00313
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055222389.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K490Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K490_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS01520Primary locus identifier stored in the genes table.
Old locus tagERS852400_00312Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval338 562-340 169 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span338 562-342 106 ntGCF_001406175::NZ_CYYJ01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span338 562-342 106 nt3 545 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 562 nt342 106 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS01520GCF_001406175#ARA20_RS01520
RRunclassifiedCurrent focus
338 562-340 169 nt · Forward (+)
ARA20_RS01525GCF_001406175#ARA20_RS01525
HKClassic
340 202-342 106 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS01520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0100710
Simplified PFAM architecture for RROC_0100710
PFAM domain coverage: 321 / 535 aa (60.0%)
1 aa535 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0100710
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS01520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key