1 HAMP#1
198-269 aa · 72 aa · 12.9% of protein
Raw token
HAMP:198:4.32e-17:269:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS01145
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength556 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS01145Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length556 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 556 aa (45.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa556 aa
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 12.2% of protein
Raw token
HisKA:280:6.64e-16:347:68:643 HATPase_c#3
395-506 aa · 112 aa · 20.1% of protein
Raw token
HATPase_c:395:9.19e-35:506:112:109- Raw architecture: HAMP:198:4.32e-17:269:72:69#HisKA:280:6.64e-16:347:68:64#HATPase_c:395:9.19e-35:506:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247253-249605Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_00237RefSeq proteinWP_055222365.1
Context group ID
GCF_001406175::NZ_CYYJ01000001.1::G00003Context members
ARA20_RS01140ARA20_RS01145
Partner locus tags
ARA20_RS01140ARA20_RS01145
Partner old locus tags
ERS852400_00236ERS852400_00237
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055222365.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K220Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K220_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS01145Primary locus identifier stored in the genes table.
Old locus tagERS852400_00237Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000001.1Sequence record reported by the local genomic context database.
Genomic interval247 935-249 605 nt1 671 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span247 253-249 605 ntGCF_001406175::NZ_CYYJ01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000001.1All displayed genes belong to this local TCS context.
Neighborhood span247 253-249 605 nt2 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 253 nt249 605 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS01140GCF_001406175#ARA20_RS01140
RROmpR
247 253-247 942 nt · Reverse (-)
ARA20_RS01145GCF_001406175#ARA20_RS01145
HKClassicCurrent focus
247 935-249 605 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS01145The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1272631
Simplified PFAM architecture for HKOC_1272631
PFAM domain coverage: 227 / 556 aa (40.8%)
1 aa556 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[217-268] | HisKA[281-345] | HATPase_c[395-504]
- Domain count: 3
- Matched identifier: HKOC_1272631
- Positioned domains: HAMP 217-268 ; HisKA 281-345 ; HATPase_c 395-504
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS01145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key