1 HAMP#1
104-164 aa · 61 aa · 15.6% of protein
Raw token
HAMP:104:0.00000000197:164:61:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS13940
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS13940Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 391 aa (58.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation3 items
2 HisKA#2
177-240 aa · 64 aa · 16.4% of protein
Raw token
HisKA:177:0.000000000181:240:64:643 HATPase_c#3
286-388 aa · 103 aa · 26.3% of protein
Raw token
HATPase_c:286:3.28e-21:388:105:109- Raw architecture: HAMP:104:0.00000000197:164:61:69#HisKA:177:0.000000000181:240:64:64#HATPase_c:286:3.28e-21:388:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000016.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9329-11166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02842RefSeq proteinWP_242859666.1
Context group ID
GCF_001406175::NZ_CYYJ01000016.1::G00048Context members
ARA20_RS13935ARA20_RS13940
Partner locus tags
ARA20_RS13935ARA20_RS13940
Partner old locus tags
ERS852400_02841ERS852400_02842
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_242859666.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NZT0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NZT0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS13940Primary locus identifier stored in the genes table.
Old locus tagERS852400_02842Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000016.1Sequence record reported by the local genomic context database.
Genomic interval9 991-11 166 nt1 176 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 329-11 166 ntGCF_001406175::NZ_CYYJ01000016.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000016.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000016.1All displayed genes belong to this local TCS context.
Neighborhood span9 329-11 166 nt1 838 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 329 nt11 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS13935GCF_001406175#ARA20_RS13935
RROmpR
9 329-10 003 nt · Forward (+)
ARA20_RS13940GCF_001406175#ARA20_RS13940
HKClassicCurrent focus
9 991-11 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS13940The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2519982
Simplified PFAM architecture for HKOC_2519982
PFAM domain coverage: 213 / 391 aa (54.5%)
1 aa391 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[116-164] | HisKA[178-239] | HATPase_c[286-387]
- Domain count: 3
- Matched identifier: HKOC_2519982
- Positioned domains: HAMP 116-164 ; HisKA 178-239 ; HATPase_c 286-387
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS13940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key