1 HisKA#1
137-203 aa · 67 aa · 18.1% of protein
Raw token
HisKA:137:0.00000000000404:203:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS13095
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS13095Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 370 aa (50.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
248-365 aa · 118 aa · 31.9% of protein
Raw token
HATPase_c:248:1.6e-25:365:118:109- Raw architecture: HisKA:137:0.00000000000404:203:67:64#HATPase_c:248:1.6e-25:365:118:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000012.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span79460-81290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02672RefSeq proteinWP_330378010.1
Context group ID
GCF_001406175::NZ_CYYJ01000012.1::G00046Context members
ARA20_RS13095ARA20_RS13100
Partner locus tags
ARA20_RS13095ARA20_RS13100
Partner old locus tags
ERS852400_02672ERS852400_02673
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_330378010.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NZM9Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NZM9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS13095Primary locus identifier stored in the genes table.
Old locus tagERS852400_02672Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000012.1Sequence record reported by the local genomic context database.
Genomic interval79 460-80 572 nt1 113 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 460-81 290 ntGCF_001406175::NZ_CYYJ01000012.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000012.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000012.1All displayed genes belong to this local TCS context.
Neighborhood span79 460-81 290 nt1 831 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 460 nt81 290 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS13095GCF_001406175#ARA20_RS13095
HKClassicCurrent focus
79 460-80 572 nt · Forward (+)
ARA20_RS13100GCF_001406175#ARA20_RS13100
RROmpR
80 562-81 290 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS13095The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2683311
Simplified PFAM architecture for HKOC_2683311
PFAM domain coverage: 285 / 370 aa (77.0%)
1 aa370 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[25-127] | HisKA[138-203] | HATPase_c[249-364]
- Domain count: 3
- Matched identifier: HKOC_2683311
- Positioned domains: DUF4118 25-127 ; HisKA 138-203 ; HATPase_c 249-364
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS13095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key