1 HisKA#1
222-287 aa · 66 aa · 8.5% of protein
Raw token
HisKA:222:1.84e-18:287:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS12710
Histidine kinase, Unorthodox
Coprococcus eutactus · GCF_001406175
ClassHKTypeUnorthodoxLength779 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS12710Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length779 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 779 aa (49.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa779 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
334-448 aa · 115 aa · 14.8% of protein
Raw token
HATPase_c:334:1.6e-31:448:115:1093 Response_reg#3
486-599 aa · 114 aa · 14.6% of protein
Raw token
Response_reg:486:2.3e-21:599:114:1114 Hpt#4
686-772 aa · 87 aa · 11.2% of protein
Raw token
Hpt:686:0.000000000904:772:87:84- Raw architecture: HisKA:222:1.84e-18:287:66:64#HATPase_c:334:1.6e-31:448:115:109#Response_reg:486:2.3e-21:599:114:111#Hpt:686:0.000000000904:772:87:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000011.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81808-86068Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02594RefSeq proteinWP_055224450.1
Context group ID
GCF_001406175::NZ_CYYJ01000011.1::G00042Context members
ARA20_RS12710ARA20_RS12715
Partner locus tags
ARA20_RS12710ARA20_RS12715
Partner old locus tags
ERS852400_02594ERS852400_02595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055224450.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NZ99Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NZ99_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS12710Primary locus identifier stored in the genes table.
Old locus tagERS852400_02594Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval81 808-84 147 nt2 340 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 808-86 068 ntGCF_001406175::NZ_CYYJ01000011.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000011.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span81 808-86 068 nt4 261 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 808 nt86 068 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS12710GCF_001406175#ARA20_RS12710
HKUnorthodoxCurrent focus
81 808-84 147 nt · Reverse (-)
ARA20_RS12715GCF_001406175#ARA20_RS12715
RRRpfG
84 167-86 068 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS12710The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0596210
Simplified PFAM architecture for HKOC_0596210
PFAM domain coverage: 352 / 779 aa (45.2%)
1 aa779 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[222-287] | HATPase_c[334-450] | Response_reg[486-598] | Hpt[698-753]
- Domain count: 4
- Matched identifier: HKOC_0596210
- Positioned domains: HisKA 222-287 ; HATPase_c 334-450 ; Response_reg 486-598 ; Hpt 698-753
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS12710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key