1 HisKA#1
431-498 aa · 68 aa · 10.3% of protein
Raw token
HisKA:431:0.00000000199:498:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS12660
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength658 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS12660Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length658 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 658 aa (27.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa658 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
541-653 aa · 113 aa · 17.2% of protein
Raw token
HATPase_c:541:1.14e-30:653:113:109- Raw architecture: HisKA:431:0.00000000199:498:69:64#HATPase_c:541:1.14e-30:653:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000011.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70528-73198Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02584RefSeq proteinWP_055224437.1
Context group ID
GCF_001406175::NZ_CYYJ01000011.1::G00041Context members
ARA20_RS12655ARA20_RS12660
Partner locus tags
ARA20_RS12655ARA20_RS12660
Partner old locus tags
ERS852400_02583ERS852400_02584
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055224437.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NZC8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NZC8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS12660Primary locus identifier stored in the genes table.
Old locus tagERS852400_02584Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000011.1Sequence record reported by the local genomic context database.
Genomic interval71 222-73 198 nt1 977 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 528-73 198 ntGCF_001406175::NZ_CYYJ01000011.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000011.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000011.1All displayed genes belong to this local TCS context.
Neighborhood span70 528-73 198 nt2 671 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 528 nt73 198 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS12655GCF_001406175#ARA20_RS12655
RROmpR
70 528-71 229 nt · Reverse (-)
ARA20_RS12660GCF_001406175#ARA20_RS12660
HKClassicCurrent focus
71 222-73 198 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS12660The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0876762
Simplified PFAM architecture for HKOC_0876762
PFAM domain coverage: 286 / 658 aa (43.5%)
1 aa658 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[162-268] | HisKA[431-498] | HATPase_c[542-652]
- Domain count: 3
- Matched identifier: HKOC_0876762
- Positioned domains: DUF4118 162-268 ; HisKA 431-498 ; HATPase_c 542-652
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS12660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key