1 HisKA#1
298-364 aa · 67 aa · 10.0% of protein
Raw token
HisKA:298:5.46e-17:364:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS12105
Histidine kinase, Hybrid
Coprococcus eutactus · GCF_001406175
ClassHKTypeHybridLength672 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS12105Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 672 aa (45.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
411-528 aa · 118 aa · 17.6% of protein
Raw token
HATPase_c:411:2.23e-28:528:118:1093 Response_reg#3
551-668 aa · 118 aa · 17.6% of protein
Raw token
Response_reg:551:2.34e-29:668:118:111- Raw architecture: HisKA:298:5.46e-17:364:67:64#HATPase_c:411:2.23e-28:528:118:109#Response_reg:551:2.34e-29:668:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000010.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span63216-65234Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02473RefSeq proteinWP_055224296.1
Context group ID
GCF_001406175::NZ_CYYJ01000010.1::G00038Context members
ARA20_RS12105
Partner locus tags
ARA20_RS12105
Partner old locus tags
ERS852400_02473
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055224296.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K3N3Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K3N3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS12105Primary locus identifier stored in the genes table.
Old locus tagERS852400_02473Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000010.1Sequence record reported by the local genomic context database.
Genomic interval63 216-65 234 nt2 019 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 216-65 234 ntGCF_001406175::NZ_CYYJ01000010.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000010.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000010.1All displayed genes belong to this local TCS context.
Neighborhood span63 216-65 234 nt2 019 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 216 nt65 234 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS12105GCF_001406175#ARA20_RS12105
HKHybridCurrent focus
63 216-65 234 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS12105The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0839239
Simplified PFAM architecture for HKOC_0839239
PFAM domain coverage: 300 / 672 aa (44.6%)
1 aa672 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[298-364] | HATPase_c[412-527] | Response_reg[551-667]
- Domain count: 3
- Matched identifier: HKOC_0839239
- Positioned domains: HisKA 298-364 ; HATPase_c 412-527 ; Response_reg 551-667
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS12105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key