1 GAF#1
21-161 aa · 141 aa · 16.4% of protein
Raw token
GAF:21:0.000000938:161:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS10730
Histidine kinase, Hybrid
Coprococcus eutactus · GCF_001406175
ClassHKTypeHybridLength859 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS10730Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length859 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage442 / 859 aa (51.5%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa859 aa
Domain-by-domain annotation4 items
2 HisKA#2
481-547 aa · 67 aa · 7.8% of protein
Raw token
HisKA:481:0.0000000000002:547:67:643 HATPase_c#3
594-711 aa · 118 aa · 13.7% of protein
Raw token
HATPase_c:594:4.09e-28:711:119:1094 Response_reg#4
739-854 aa · 116 aa · 13.5% of protein
Raw token
Response_reg:739:6.79e-21:854:116:111- Raw architecture: GAF:21:0.000000938:161:141:133#HisKA:481:0.0000000000002:547:67:64#HATPase_c:594:4.09e-28:711:119:109#Response_reg:739:6.79e-21:854:116:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000008.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span22814-25393Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02190RefSeq proteinWP_055223997.1
Context group ID
GCF_001406175::NZ_CYYJ01000008.1::G00034Context members
ARA20_RS10730
Partner locus tags
ARA20_RS10730
Partner old locus tags
ERS852400_02190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223997.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K188Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K188_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS10730Primary locus identifier stored in the genes table.
Old locus tagERS852400_02190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000008.1Sequence record reported by the local genomic context database.
Genomic interval22 814-25 393 nt2 580 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 814-25 393 ntGCF_001406175::NZ_CYYJ01000008.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000008.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span22 814-25 393 nt2 580 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 814 nt25 393 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS10730GCF_001406175#ARA20_RS10730
HKHybridCurrent focus
22 814-25 393 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS10730The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0473157
Simplified PFAM architecture for HKOC_0473157
PFAM domain coverage: 299 / 859 aa (34.8%)
1 aa859 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[481-547] | HATPase_c[595-710] | Response_reg[739-854]
- Domain count: 3
- Matched identifier: HKOC_0473157
- Positioned domains: HisKA 481-547 ; HATPase_c 595-710 ; Response_reg 739-854
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS10730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key