1 HisKA#1
204-266 aa · 63 aa · 15.0% of protein
Raw token
HisKA:204:0.00000000000122:266:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS10600
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength419 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001406175#ARA20_RS10600Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length419 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 419 aa (41.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa419 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
311-419 aa · 109 aa · 26.0% of protein
Raw token
HATPase_c:311:7.46e-22:419:109:109- Raw architecture: HisKA:204:0.00000000000122:266:64:64#HATPase_c:311:7.46e-22:419:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001406175::NZ_CYYJ01000007.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span182928-184187Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_02164RefSeq proteinWP_055223964.1
Context group ID
GCF_001406175::NZ_CYYJ01000007.1::G00033Context members
ARA20_RS10600
Partner locus tags
ARA20_RS10600
Partner old locus tags
ERS852400_02164
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055223964.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9NYC2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9NYC2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS10600Primary locus identifier stored in the genes table.
Old locus tagERS852400_02164Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000007.1Sequence record reported by the local genomic context database.
Genomic interval182 928-184 187 nt1 260 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span182 928-184 187 ntGCF_001406175::NZ_CYYJ01000007.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000007.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span182 928-184 187 nt1 260 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 928 nt184 187 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA20_RS10600GCF_001406175#ARA20_RS10600
HKClassicCurrent focus
182 928-184 187 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406175#ARA20_RS10600The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2276832
Simplified PFAM architecture for HKOC_2276832
PFAM domain coverage: 170 / 419 aa (40.6%)
1 aa419 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[205-265] | HATPase_c[311-419]
- Domain count: 2
- Matched identifier: HKOC_2276832
- Positioned domains: HisKA 205-265 ; HATPase_c 311-419
Cluster members and taxonomy
Representative gene: GCF_001406175#ARA20_RS10600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key