1 HisKA_3#1
190-251 aa · 62 aa · 16.1% of protein
Raw token
HisKA_3:190:0.00000000000000125:251:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA20_RS09555
Histidine kinase, Classic
Coprococcus eutactus · GCF_001406175
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001406175#ARA20_RS09555Stable P2CS identifier used across views.
GenomeGCF_001406175Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage140 / 385 aa (36.4%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-371 aa · 78 aa · 20.3% of protein
Raw token
HATPase_c:294:0.000000000548:371:88:109- Raw architecture: HisKA_3:190:0.00000000000000125:251:64:68#HATPase_c:294:0.000000000548:371:88:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001406175::NZ_CYYJ01000006.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164360-166224Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852400_01950RefSeq proteinWP_015533204.1
Context group ID
GCF_001406175::NZ_CYYJ01000006.1::G00028Context members
ARA20_RS09550ARA20_RS09555
Partner locus tags
ARA20_RS09550ARA20_RS09555
Partner old locus tags
ERS852400_01949ERS852400_01950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015533204.1Primary protein accession used for annex mappings.
UniProt accessionA0AAI9K6J5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAI9K6J5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA20_RS09555Primary locus identifier stored in the genes table.
Old locus tagERS852400_01950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval165 067-166 224 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span164 360-166 224 ntGCF_001406175::NZ_CYYJ01000006.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001406175::NZ_CYYJ01000006.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span164 360-166 224 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 360 nt166 224 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA20_RS09550GCF_001406175#ARA20_RS09550
RRNarL
164 360-165 013 nt · Reverse (-)
ARA20_RS09555GCF_001406175#ARA20_RS09555
HKClassicCurrent focus
165 067-166 224 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210595#CCU_RS00820Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565112
Simplified PFAM architecture for HKOC_2565112
PFAM domain coverage: 145 / 385 aa (37.7%)
1 aa385 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[190-252] | HATPase_c[293-374]
- Domain count: 2
- Matched identifier: HKOC_2565112
- Positioned domains: HisKA_3 190-252 ; HATPase_c 293-374
Cluster members and taxonomy
Representative gene: GCF_000210595#CCU_RS00820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 043 · GCF_001406175
Assembly13414_6#27 · Scaffoldhaploid
Genome composition3 235 561 bp · 43,5% GCCoprococcus eutactus
Signal transduction countsGenes 80 · HK 41 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key